PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family RAV
Protein Properties Length: 657aa    MW: 75173.3 Da    PI: 9.2022
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9193genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.94.4e-072975254
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                              ++kG+    ++g W A+I+       + +r++lg+f ++ +Aa a++ a  kl+
  Tp57577_TGAC_v2_mRNA9193 29 KFKGIV-PQQNGHWGAQIYA------NhQRIWLGTFKSERDAAMAYDSATIKLR 75
                              567774.455788****999......44**********99********999887 PP

2B385.54.7e-27146244184
                               EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                               f+k+ltpsdv+k++rlv+pkk+a ++               ++k  ++++++++d+  r W+++++y+k+s++yv+t+GW++Fvk
  Tp57577_TGAC_v2_mRNA9193 146 FQKELTPSDVGKLNRLVIPKKHAVTYfplvydnnitaneneDHKCSSDVEVVFYDKLMRLWRFRYCYWKSSQSYVFTRGWNRFVK 230
                               99******************************9999988776666799************************************* PP

                               HHT--TT-EEEEEE CS
                        B3  71 angLkegDfvvFkl 84 
                               +++Lk++D++vF+ 
  Tp57577_TGAC_v2_mRNA9193 231 DKKLKAKDTIVFYT 244
                               ************93 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-192886No hitNo description
SMARTSM003801.4E-162990IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-152984IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-132986IPR016177DNA-binding domain
PROSITE profilePS5103216.1472984IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-31141247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-26144250IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-24145243No hitNo description
PROSITE profilePS5086310.785146264IPR003340B3 DNA binding domain
SMARTSM010191.6E-19146256IPR003340B3 DNA binding domain
PfamPF023627.2E-24146244IPR003340B3 DNA binding domain
PfamPF087432.8E-23497586IPR014854Non-structural maintenance of chromosome element 4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAGSYEMLCS TEINNLAKRA RYEAEGSQKF KGIVPQQNGH WGAQIYANHQ RIWLGTFKSE  60
RDAAMAYDSA TIKLRSGESN RNFPWNDQTV QEPFFQSHYS METILSMIRN GTYQSKFATF  120
LRNQNQSGIV GVKKGGGEQF SCTQLFQKEL TPSDVGKLNR LVIPKKHAVT YFPLVYDNNI  180
TANENEDHKC SSDVEVVFYD KLMRLWRFRY CYWKSSQSYV FTRGWNRFVK DKKLKAKDTI  240
VFYTCEPINF KKCGDHHEQL FSLIDVIYHR KKGEDAKHVL EKRIIISNEV DDEETQGRID  300
LNAFHSTHNN ADTGFKLFGV KTNPTSYIDS SGVTEKKDDL MNTDSDKFDS ILHEFDKLHD  360
KVKRPREQVA DAEALLDLTH NLLGSVKSLV NEGVTPSQFV SSLLKHYAHP PNTSIHWQKL  420
GIAVSPIFLT VHAPSTMLGP MENQLKQRKA IMPRKRAPRA TTTARPEQLD DAVGGEKTDT  480
DKNMSIMFNI LREKKRVQLE HLILNRFSFA QTVENLFALS FLVKDGRAEI IMDKNRVHYV  540
APKNAPAANS VMSKEVSYTH FVFRYDFNDW KIMKDVVAEG EELMPHRIQY SNMVNSPAET  600
SGDNSQQAAA VTPIRKISRN RGRVLQEEVV VEESPECSDE HFSRAAAIRR CKRKLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2514524213100DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497405.10.0PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like
TrEMBLG7IB210.0G7IB21_MEDTR; Nse4, component of Smc5/6 DNA repair complex protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-103RAV family protein